Timeout handling in JdbcIO with Oracle java driver

Hello, we have a batch pipeline that is reading data from Oracle, writing it to BigQuery.
Using JdbcIO, BigQueryIO and Oracle driver [3].

We run this job 2 times in a day, the pipeline usually works fine, it completed within 10 minutes.

But sometimes we have a [1] warning from this job, it never finished until we cancelling it.
(sometimes means 4 times in last month)

Even we set timeout configuration for our code [2], warning log says [1] Processing stuck in step Read JDBC.
 
Would you explain and correct us this kind of problem?

We already contacted Google Support Team, they said our configuration code is looked fine them. Then they instructed us to ask here.

Thanks,
Bya

[1] Warning Log

```

Processing stuck in step Read JDBC/JdbcIO.Read/JdbcIO.ReadAll/ParDo(Read) for at least 13h40m00s without
outputting or completing in state process at sun.nio.ch.FileDispatcherImpl.read0(Native Method) at sun.nio.ch.SocketDispatcher.read(SocketDispatcher.java:39)
at sun.nio.ch.IOUtil.readIntoNativeBuffer(IOUtil.java:223) at sun.nio.ch.IOUtil.read(IOUtil.java:197)
at sun.nio.ch.SocketChannelImpl.read(SocketChannelImpl.java:380) at oracle.net.nt.TimeoutSocketChannel.read(TimeoutSocketChannel.java:144)
at oracle.net.ns.NIOHeader.readHeaderBuffer(NIOHeader.java:82) at oracle.net.ns.NIOPacket.readFromSocketChannel(NIOPacket.java:139)
at oracle.net.ns.NIOPacket.readFromSocketChannel(NIOPacket.java:101) at oracle.net.ns.NIONSDataChannel.readDataFromSocketChannel(NIONSDataChannel.java:80)
at oracle.jdbc.driver.T4CMAREngineNIO.prepareForReading(T4CMAREngineNIO.java:98) at oracle.jdbc.driver.T4CMAREngineNIO.unmarshalUB1(T4CMAREngineNIO.java:534)
at oracle.jdbc.driver.T4CTTIfun.receive(T4CTTIfun.java:485) at oracle.jdbc.driver.T4CTTIfun.doRPC(T4CTTIfun.java:252)
at oracle.jdbc.driver.T4C8Oall.doOALL(T4C8Oall.java:612) at oracle.jdbc.driver.T4CPreparedStatement.doOall8(T4CPreparedStatement.java:226)
at oracle.jdbc.driver.T4CPreparedStatement.doOall8(T4CPreparedStatement.java:59) at oracle.jdbc.driver.T4CPreparedStatement.executeForDescribe(T4CPreparedStatement.java:747)
at oracle.jdbc.driver.OracleStatement.executeMaybeDescribe(OracleStatement.java:904) at oracle.jdbc.driver.OracleStatement.doExecuteWithTimeout(OracleStatement.java:1082)
at oracle.jdbc.driver.OraclePreparedStatement.executeInternal(OraclePreparedStatement.java:3780) at
oracle.jdbc.driver.T4CPreparedStatement.executeInternal(T4CPreparedStatement.java:1343) at oracle.jdbc.driver.OraclePreparedStatement.executeQuery(OraclePreparedStatement.java:3822)
at oracle.jdbc.driver.OraclePreparedStatementWrapper.executeQuery(OraclePreparedStatementWrapper.java:1165)
at org.apache.commons.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:83)
at org.apache.commons.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:83)
at org.apache.commons.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:83)
at org.apache.commons.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:83)
at org.apache.beam.sdk.io.jdbc.JdbcIO$ReadFn.processElement(JdbcIO.java:601) at org.apache.beam.sdk.io.jdbc.JdbcIO$ReadFn$DoFnInvoker.invokeProcessElement(Unknown
Source)

```

 

[2] Jdbc configure
```

import org.apache.beam.sdk.io.jdbc.JdbcIO;
import oracle.jdbc.driver.OracleConnection;

JdbcIO.DataSourceConfiguration
dataSource = JdbcIO
.DataSourceConfiguration.create("oracle.jdbc.driver.OracleDriver",
oracleUrl)
.withUsername(oracleUser)
.withPassword(oraclePassword)

.withConnectionProperties(String.format("%s=%s",
OracleConnection.CONNECTION_PROPERTY_THIN_NET_CONNECT_TIMEOUT,
10000))
.withConnectionProperties(String.format("%s=%s",
OracleConnection.CONNECTION_PROPERTY_THIN_READ_TIMEOUT,
600000))
.withConnectionProperties(String.format("%s=%s",

OracleConnection.CONNECTION_PROPERTY_TIMEZONE_AS_REGION, false))
.withConnectionProperties(String.format("%s=%s",

OracleConnection.CONNECTION_PROPERTY_NET_KEEPALIVE, false))
;

pipeline.apply(JdbcIO.read()

.withDataSourceConfiguration(dataSource)
.withQuery(readQuery)
.withCoder(TableRowJsonCoder.of())

.withRowMapper(new TableRowRowMapper())
);

```

 

[3] Oracle DB driver: ojdbc8 12.2.0.1

 

 

Imported from Jira [BEAM-5305](https://issues.apache.org/jira/browse/BEAM-5305). Original Jira may contain additional context.
Reported by: bya.