Animation broken when adding new node on new Graphin projects

### Describe the bug

When creating a new Graphin project with default dependencies, the graph layout animation won't work when adding new nodes to an existing graph.

### Your Example Website or App

https://codesandbox.io/p/github/nicocti/bp-graph/csb-tcm10s/draft/hungry-keller?file=%2FREADME.md

### Steps to Reproduce the Bug or Issue

1. Start a new React/Graphin project with latest dependencies
2. Handle node creation in the graph component
3. Test it

### Expected behavior

On previous Graphin version, adding a new node to an existing graph would use a smooth animation while layout refresh.

### Screenshots or Videos

_No response_

### Platform

- OS: Linux
- Browser: Chrome & Firefox
- Version: >100

### Additional context

_No response_

Start with the linked CodeSandbox and reproduce the issue in a new React/Graphin project using the latest dependencies. Trace node creation and the graph layout refresh, then verify that adding a node to an existing graph again produces the smooth animation seen in earlier Graphin versions.

Written by the indexing model from the issue text.