Quality seems to have degraded after upgrading from beta to v1 (auto pr)

After upgrading from beta to v1, there appears to be mismatches with inline comments where comments are not being placed on the correct lines but are slightly off. The only change made was adding more detailed content to the system-prompt in claude_args.
Additionally, the following tool configurations have been added:
```
--allowedTools "mcp__github_inline_comment__create_inline_comment,mcp__github__create_pending_pull_request_review,mcp__github__add_comment_to_pending_review,mcp__github__submit_pending_pull_request_review,mcp__github__get_pull_request_diff,mcp__github__get_pull_request_files,mcp__github__get_pull_request"
--disallowedTools "mcp__github__create_and_submit_pull_request_review"
--model bedrock-claude-sonnet-4-20250514-v1
```