angelolab / angelolab/publications
Missing file for Figure 3 reproduction: timepoint_combined_features_outcome_labels.csv
- Lenguaje dominante
- Jupyter Notebook
- Estrellas
- 20
- Forks
- 4
- Métricas de merge de PR
- Sin PR fusionados en 30 d
Descripción
Hi,
Thank you for making the TONIC data and code publicly available.
I am trying to reproduce Figure 3 using the public Zenodo release together with the GitHub code. However, the Figure 3 script references the file:
analysis_files/timepoint_combined_features_outcome_labels.csv
This file does not appear to be included in the Zenodo package I downloaded.
In analysis_files, I can find files such as:
timepoint_combined_features.csv
timepoint_evolution_features.csv
timepoint_features.csv
timepoint_features_filtered.csv
but not timepoint_combined_features_outcome_labels.csv.
From the script, it seems that this file is specifically needed for panels Fig. 3f/3g, since it contains the Clinical_benefit column used for grouping samples.
I understand that outcome labels may not be publicly released due to privacy restrictions, but I wanted to confirm whether Fig. 3f/3g are reproducible from the public package or not.
Thank you very much for your help.
Best regards
Guía de contribución
No hay ninguna guía de contribución indexada para este repositorio
Evaluación
Este issue todavía no se ha evaluado.