ament_cmake_flake8 ignores value of AMENT_LINT_AUTO_FILE_EXCLUDE

When I use `ament_lint_auto` and want to exclude certain files, only a subset of the linters obey that variable `AMENT_LINT_AUTO_FILE_EXCLUDE`.

This issue is specific to `ament_cmake_flake8`. If you take a look at #386, you can see exclude logic was never added to it.