Remaining improvement of headers cleanup for analytical engine

**Is your feature request related to a problem? Please describe.**

- [ ] Clean up headers of frame/*.cc to reduce building time of project/building app
- [ ] Split the `project_frame.cc` base on the projected fragment type, only include the related fragment header
- [ ] Clean up headers of tests .cc like test/run_app.cc

**Describe the solution you'd like**
A clear and concise description of what you want to happen.

**Describe alternatives you've considered**
A clear and concise description of any alternative solutions or features you've considered.

**Additional context**
#1541