Cleaning up the working directory fails if the application created files/directories under different UID/GID.

Describe the bug
In a GitHub-hosted runner the issue doesn't occur due to Azure clean-up strategy. While in the self-hosted runner is pretty common.

While the runtime creates the files owned by i.e. root under a non-root user (i.e. runner), the Post Checkout or whatever else fails to fully cleanup the working directory, resulting in further failures of the self-hosted and corruption of the pending steps / other workflows.

To Reproduce
Steps to reproduce the behavior:

1. Create self-hosted runner.
2. Run a workflow what's checking branch and creating a directory along with a file, both owned by root or other user.
3. Create another workflow step what's checking out the same or other branch or re-run the workflow under the same repo or any other under the same runner.
4. Get the error as follows:

Warning: Unable to clean or reset the repository. The repository will be recreated instead.
Deleting the contents of '/home/runner/actions-runner/_work/<working dir>/<repo>'
Error: File was unable to be removed Error: EACCES: permission denied, unlink '/home/runner/actions-runner/_work/<working dir>/<repo>/<root owned DIR>/<root owned FILE>'

Expected behavior
Once the step is finished, GitHub runner attempts to use SUDO as to cleanup remainings of the _work directory, in order to make sure the work zone is ready for the rest of the tasks.

Runner Version and Platform

Linux-x64-2.230.0

OS of the machine running the runner?
Debian 12 server

What's not working?

The final cleanup job of the runner.

Job Log Output

The log comes from https://github.com/GamePlayer-8/stoney-kernel/actions/runs/11687408761/job/32546565772

Run actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332
  with:
    repository: GamePlayer-8/stoney-kernel
    token: ***
    ssh-strict: true
    ssh-user: git
    persist-credentials: true
    clean: true
    sparse-checkout-cone-mode: true
    fetch-depth: 1
    fetch-tags: false
    show-progress: true
    lfs: false
    submodules: false
    set-safe-directory: true
  env:
    DEBIAN_FRONTEND: noninteractive
    TZ: Etc/UTC
Syncing repository: GamePlayer-8/stoney-kernel
Getting Git version info
  Working directory is '/home/runner/actions-runner/_work/stoney-kernel/stoney-kernel'
  /usr/bin/git version
  git version 2.39.5
Temporarily overriding HOME='/home/runner/actions-runner/_work/_temp/099e3bdf-613f-4e79-a90d-85068bb500bc' before making global git config changes
Adding repository directory to the temporary git global config as a safe directory
/usr/bin/git config --global --add safe.directory /home/runner/actions-runner/_work/stoney-kernel/stoney-kernel
/usr/bin/git config --local --get remote.origin.url
https://github.com/GamePlayer-8/stoney-kernel
Removing previously created refs, to avoid conflicts
  /usr/bin/git rev-parse --symbolic-full-name --verify --quiet HEAD
  refs/heads/main
  /usr/bin/git checkout --detach
  HEAD is now at 1dd5b26 install gawk & diffutils to the alpine image
  /usr/bin/git branch --delete --force main
  Deleted branch main (was 1dd5b26).
/usr/bin/git submodule status
Cleaning the repository
Warning: Unable to clean or reset the repository. The repository will be recreated instead.
Deleting the contents of '/home/runner/actions-runner/_work/stoney-kernel/stoney-kernel'
Error: File was unable to be removed Error: EACCES: permission denied, unlink '/home/runner/actions-runner/_work/stoney-kernel/stoney-kernel/packages/kernel-alpine.tar.gz'

Runner and Worker's Diagnostic Logs

Worker_20241105-232849-utc.log

Start at the runner's final cleanup job and reproduce the failure on a self-hosted Debian 12 runner using files and directories owned by another UID/GID. No source files or tests are named; done means the working directory is cleaned successfully and later workflow steps are not blocked by permission errors.