skipper applicability
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 10
- Forks
- 6
- PR merge metrics
- No merged PRs in 30d
Description
Dear developers,
Thank you for this great tool.
I would like to try skipper to detect binding sites in a HITS-CLIP (not eCLIP) experiment for which I have IP and IgG samples in two biological replicates, sequenced with unstranded libraries.
Would it be suitable? If so, could you recommend the appropriate settings to use?
Best regards,
Mattia
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. Start by checking the project's documented supported assay types and configuration guidance; done means providing a clear answer about HITS-CLIP with unstranded biological replicates and recommended settings.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100