UCL / UCL/STIR

GHA: MacOS failure to import numpy

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Dominant language
C++
Stars
160
Forks
113
Avg merge
12d 15h
Merged PRs (30d)
1

Description

https://github.com/UCL/STIR/runs/4716700749?check_suite_focus=true#step:11:37

/usr/local/Cellar/python@3.9/3.9.9/Frameworks/Python.framework/Versions/3.9/lib/python3.9/importlib/__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
swig/test/python/test_IO.py:14: in <module>
    from stir import *
../install/python/stir.py:15: in <module>
    from _stir import *
E   ImportError: numpy.core.multiarray failed to import
------------------------------- Captured stderr --------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python3.9/site-packages/numpy/__init__.py", line 380, in <module>
    raise RuntimeError(msg)

More than likely due to version conflict between the brew Python and another one, see e.g. https://stackoverflow.com/questions/58342005/macos-python3-with-brew-error-on-import-cv2

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Research direction

Inspect the linked macOS GitHub Actions run, the Python environment it uses, and swig/test/python/test_IO.py, which imports stir through install/python/stir.py. Reproduce the failure with that environment; done means the macOS job imports stir and numpy successfully and the test passes without the multiarray error.

Written by the indexing model from the issue text.

Assessment

Tech stack
cpp, github-actions, numpy, python
Domain
ci-cd, testing
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
30/100

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