UCL-ARC / UCL-ARC/rcps-buildscripts
Install Request: Fiji
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- Dominant language
- Shell
- Stars
- 42
- Forks
- 26
- PR merge metrics
- No merged PRs in 30d
Description
Would it be possible to install Fiji https://imagej.net/software/fiji/downloads and https://imagej.net/plugins/bigstitcher/
Cluster: Myriad
Fiji is for image analysis as I am sure you know and Bigsticher is for registring my LSM datasets currently on RDSS. I need a GUI and intend to use onDemand.
Thank you
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the repository's existing build scripts and the Fiji downloads and BigStitcher pages linked in the issue. Confirm what is required for Fiji and BigStitcher to run with a GUI through OnDemand on the Myriad cluster; done means the requested tools are available there for the stated image-analysis workflow.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- shell
- Domain
- infrastructure
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100