SpikeInterface / SpikeInterface/spikeinterface
Kilosort 4 for Neuropixels 2 - multi shank
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- Dominant language
- Python
- Stars
- 847
- Forks
- 280
- Avg merge
- 3d 9h
- Merged PRs (30d)
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Description
Hi,
I have tried to look for a concerted tutorial for implementing KS4 for NPX2.0 probes but I might just be missing it in the docs. Is there a compiled document/notebook for the entire process readily availble: from the preprocessing into groups and then sorting and saving the aggregated recording and the associated channel maps (after changing the sort order)
Sorry if this is redundant I could not readily find the related information.
Thanks a lot!
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the existing documentation and notebooks for Kilosort 4 and Neuropixels 2.0 workflows. Determine whether a single end-to-end tutorial is missing, covering preprocessing, grouping, sorting, saving the aggregated recording, and producing channel maps after changing sort order. Done means a maintainer-approved document or notebook covers that complete process.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100