SpikeInterface / SpikeInterface/spikeinterface
Help with phase_shift pre-processing with binary recording
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- Dominant language
- Python
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- 847
- Forks
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- Avg merge
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- Merged PRs (30d)
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Description
I'm using Open Ephys' ONIX system to record my Neuropixel 1.0 recordings. This system spits out a binary file that I load with read_binary. I'm aware that the phase_shift pre-process requires a inter_sample_shift property in the recording that is automatically loaded from spikeglx and openephys read functions. In the absence of that, is there a way to generate/calculate this shift so that I can run the phase_shift on my data before using kilosort?
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Research direction
Start by reviewing the read_binary entry point and the phase_shift pre-processing path, focusing on how inter_sample_shift is obtained by the SpikeGLX and Open Ephys readers. Determine whether a shift can be derived for ONIX binary recordings and define what support or documentation is needed for running phase_shift before Kilosort.
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Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100