SpikeInterface / SpikeInterface/spikeinterface

Sorting analyzer does not propagate sparsity to template extension

Open
#2,877 2 comments 0 reactions 1 assignee View on GitHub

@h-mayorquin is already working on this.

Since May 17, 2024.

bug core
Dominant language
Python
Stars
847
Forks
280
Avg merge
3d 9h
Merged PRs (30d)
29

Description

from spikeinterface.core import create_sorting_analyzer

from spikeinterface.core import generate_ground_truth_recording

job_kwargs = dict(
    n_jobs=1,
    progress_bar=False,
    verbose=False,
    chunk_duration=1.0,
)

recording, sorting = generate_ground_truth_recording(num_channels=384, durations=[10], seed=0)

analyzer = create_sorting_analyzer(sorting, recording, sparse=True, format="memory", **job_kwargs)


random_spike_parameters = {
    "method": "all",
}


template_extension_parameters = {
    "ms_before": 3.0,
    "ms_after": 5.0,
    "operators": ["average"],
}


extensions = {
    "random_spikes": random_spike_parameters,
    "templates": template_extension_parameters,
}

analyzer.compute_several_extensions(
    extensions=extensions,
    **job_kwargs
)

template = analyzer.get_extension("templates").get_data(outputs="Templates")
template.sparsity
template.are_templates_sparse()

Outputs False

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