SpikeInterface / SpikeInterface/spikeinterface
Getting spike amplitudes on each electrode of a tetrode for visual comparison between automatically and manually sorted clusters
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- Dominant language
- Python
- Stars
- 847
- Forks
- 280
- Avg merge
- 3d 9h
- Merged PRs (30d)
- 29
Description
Hi,
I am still quite new to Spikeinterface and was thinking about a way to compare automatic and manual sorted clusters for tetrode recordings. Since manual clustering is based on spike distribution in six different electrode-electrode projection plots (spike amplitude on electrode 1 vs spike amplitude on electrode 2, spike amplitude on electrode 1 vs spike amplitude on electrode 3 ...), I was wondering if there is a function in Spikeinterface that can output spike amplitudes on each electrode of a tetrode for the automatically sorted units. It would be great to get the data and then plot to compare with manually sorted units.
Thanks!
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named. Start by locating the SpikeInterface API for retrieving spike amplitudes from automatically sorted units, then check whether it exposes amplitudes per electrode for tetrode recordings. Done means obtaining data suitable for plotting electrode-pair amplitude comparisons against manually sorted clusters.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100