SpikeInterface / SpikeInterface/spikeinterface-dockerfiles
Problem with installing Kilosort2 using Docker on Windows (Visual Studio Code)
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Description
Im currently trying to pull an image from the spikeinterface Docker Hub using the following code (on Visual Studio Code):
sorting_KS2 = ss.run_sorter(sorter_name="kilosort2", recording=recording_preprocessed, docker_image=True, verbose=False)
However, I get the following error:
I verified that this file dows exist using powershell.
I am new to spikeinterface and is the first time using docker so would appreciate any help on how to solve this issue. Thanks.
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Research direction
Start by reproducing the ss.run_sorter call with sorter_name="kilosort2" and docker_image=True in Visual Studio Code on Windows, using the PowerShell environment mentioned in the report. Inspect the displayed error and Docker setup; done means the Kilosort2 image runs successfully through this entry point.
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Assessment
- Tech stack
- docker, python, vscode
- Domain
- devops
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100