SimVascular / SimVascular/svVascularize

Remeshing Issue (also occurred when Tissue set to False)

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bug
Dominant language
Python
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1h 58m
Merged PRs (30d)
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Description

Description

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "", line 1, in
File "C:\Users\micha\miniconda3\envs\svv\lib\site-packages\svv\simulation\simulation.py", line 95, in build_meshes
fluid_surface_mesh = self.synthetic_object.export_solid(watertight=True)
File "C:\Users\micha\miniconda3\envs\svv\lib\site-packages\svv\tree\tree.py", line 296, in export_solid
model = build_watertight_solid(self)
File "C:\Users\micha\miniconda3\envs\svv\lib\site-packages\svv\tree\export\export_solid.py", line 405, in build_watertight_solid
model = union_tubes(tubes, lines, cap_resolution=cap_resolution)
File "C:\Users\micha\miniconda3\envs\svv\lib\site-packages\svv\tree\export\export_solid.py", line 381, in union_tubes
model = remesh_surface(model, hsiz=hsize)
File "C:\Users\micha\miniconda3\envs\svv\lib\site-packages\svv\utils\remeshing\remesh.py", line 501, in remesh_surface
subprocess.check_call(executable_list)
File "C:\Users\micha\miniconda3\envs\svv\lib\subprocess.py", line 373, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['C:\Users\micha\miniconda3\envs\svv\lib\site-packages\svv\utils\remeshing\Windows\mmgs_O3.exe', 'tmp.mesh', '-v', '1', '-hsiz', '0.0010348719102400916']' returned non-zero exit status 1.

Reproduction

import pyvista as pv
from svv.domain.domain import Domain
from svv.tree.tree import Tree

mesh = pv.read('sample_baffle_extrude.stl').triangulate()
baffle = Domain(mesh)
baffle.create()
baffle.solve()
baffle.build()

t = Tree()
t.set_domain(baffle)
t.set_root()
t.n_add(10)

from svv.simulation.simulation import Simulation

sim = Simulation(t)
sim.build_meshes(fluid=True,tissue=False,boundary_layer=False)
sim.extract_faces()

Expected behavior

Adequate remeshing -> generate appropriate vtp/vtu files

Additional context

No response

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First steps

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Research direction

Reproduce the failure with the provided PyVista, Domain, Tree, and Simulation example, then trace the call from Simulation.build_meshes through tree/export/export_solid.py to utils/remeshing/remesh.py. Inspect the mmgs_O3.exe invocation and its non-zero exit status, and compare the generated mesh artifacts with the expected VTP/VTU output.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
computer-graphics
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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