Preprocessing installation fails

Open
#1 2 comments 0 reactions 1 assignee View on GitHub

@fasnicar is already working on this.

Since Aug 6, 2024.

Assessment

This issue has not been assessed yet.

Description

For installation of the preprocessing I tried the code:

conda install preprocessing -c fasnicar

It returns:

Channels:

  • fasnicar
  • conda-forge
    Platform: osx-arm64
    Collecting package metadata (repodata.json): -
    done
    Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:

  • nothing provides bowtie2 >=2.0.0 needed by preprocessing-0.2.4-py_0

Could not solve for environment specs
The following package could not be installed
└─ preprocessing is not installable because it requires
└─ bowtie2 >=2.0.0 , which does not exist (perhaps a missing channel).

I installed bowtie2 with the most recent version, and that part works. I am not sure how to solve this problem.

Dominant language
Python
Stars
15
Forks
3
PR merge metrics
No merged PRs in 30d

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

More from SegataLab/preprocessing

All issues in SegataLab/preprocessing

Similar issues

More Python issues

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.