User cannot update published Dataset (500 error)

Issue Name

User cannot update published Dataset

Summary

One of our users who has published a dataset is unable to update metadata afterwards. They tried to update the Related Publications array but the server returned a {"statusCode":500,"message":"Internal server error"}

Steps to Reproduce

Create a published dataset and click "Edit", this shows the same fields but in edit-mode. Click "Update Published Data" to get the error.

Current Behaviour

User cannot update published metadata.

Expected Behaviour

User should be able to edit published metadata, given they have correct access rights.

Extra Details

From the logs:

[Nest] 1  - 10/23/2023, 9:01:10 AM     LOG Static access group getAccessGroups : 
<ref *2> Writable {
  _writableState: WritableState {
    objectMode: false,
    highWaterMark: 16384,
    finalCalled: false,
    needDrain: false,
    ending: false,
    ended: false,
    finished: false,
    destroyed: false,
    decodeStrings: true,
    defaultEncoding: 'utf8',
    length: 0,
    writing: false,
    corked: 0,
    sync: true,
    bufferProcessing: false,
    onwrite: [Function: bound onwrite],
    writecb: null,
    writelen: 0,
    afterWriteTickInfo: null,
    buffered: [],
    bufferedIndex: 0,
    allBuffers: true,
    allNoop: true,
    pendingcb: 0,
    constructed: true,
    prefinished: false,
    errorEmitted: false,
    emitClose: true,
    autoDestroy: true,
    errored: null,
    closed: false,
    closeEmitted: false,
    [Symbol(kOnFinished)]: []
  },
  _events: [Object: null prototype] {
    response: [Function: handleResponse],
    error: [Function: handleRequestError],
    socket: [ [Function: handleRequestSocket], [Function: destroyOnTimeout] ]
  },
  _eventsCount: 3,
  _maxListeners: undefined,
  _options: {
    maxRedirects: '5',
    maxBodyLength: Infinity,
    protocol: 'http:',
    path: '/undefined',
    method: 'PUT',
    headers: [Object: null prototype] {
      Accept: 'application/json, text/plain, */*',
      'Content-Type': 'application/json;charset=UTF-8',
      'User-Agent': 'axios/1.4.0',
      'Accept-Encoding': 'gzip, compress, deflate, br'
    },
    agents: { http: undefined, https: undefined },
    auth: 'removed:removed',
    family: undefined,
    lookup: undefined,
    beforeRedirect: [Function: dispatchBeforeRedirect],
    beforeRedirects: { proxy: [Function: beforeRedirect] },
    hostname: 'localhost',
    port: '',
    agent: undefined,
    nativeProtocols: { 'http:': [Object], 'https:': [Object] },
    pathname: '/undefined'
  },
  _ended: true,
  _ending: true,
  _redirectCount: 0,
  _redirects: [],
  _requestBodyLength: 0,
  _requestBodyBuffers: [],
  _onNativeResponse: [Function (anonymous)],
  _currentRequest: <ref *1> ClientRequest {
    _events: [Object: null prototype] {
      response: [Function],
      abort: [Function (anonymous)],
      aborted: [Function (anonymous)],
      connect: [Function (anonymous)],
      error: [Function (anonymous)],
      socket: [Function (anonymous)],
      timeout: [Function (anonymous)]
    },
    _eventsCount: 7,
    _maxListeners: undefined,
    outputData: [],
    outputSize: 0,
    writable: true,
    destroyed: false,
    _last: true,
    chunkedEncoding: false,
    shouldKeepAlive: false,
    maxRequestsOnConnectionReached: false,
    _defaultKeepAlive: true,
    useChunkedEncodingByDefault: true,
    sendDate: false,
    _removedConnection: false,
    _removedContLen: false,
    _removedTE: false,
    strictContentLength: false,
    _contentLength: 0,
    _hasBody: true,
    _trailer: '',
    finished: true,
    _headerSent: true,
    _closed: false,
    socket: Socket {
      connecting: false,
      _hadError: true,
      _parent: null,
      _host: 'localhost',
      _closeAfterHandlingError: false,
      _readableState: [ReadableState],
      _events: [Object: null prototype],
      _eventsCount: 8,
      _maxListeners: undefined,
      _writableState: [WritableState],
      allowHalfOpen: false,
      _sockname: null,
      _pendingData: 'PUT /undefined HTTP/1.1\r\n' +
        'Accept: application/json, text/plain, */*\r\n' +
        'Content-Type: application/json;charset=UTF-8\r\n' +
        'User-Agent: axios/1.4.0\r\n' +
        'Accept-Encoding: gzip, compress, deflate, br\r\n' +
        'Host: localhost\r\n' +
        'Authorization: Basic cmVtb3ZlZDpyZW1vdmVk\r\n' +
        'Connection: close\r\n' +
        'Content-Length: 0\r\n' +
        '\r\n',
      _pendingEncoding: 'latin1',
      server: null,
      _server: null,
      parser: null,
      _httpMessage: [Circular *1],
      timeout: 5000,
      [Symbol(async_id_symbol)]: 4594011,
      [Symbol(kHandle)]: null,
      [Symbol(lastWriteQueueSize)]: 0,
      [Symbol(timeout)]: Timeout {
        _idleTimeout: -1,
        _idlePrev: null,
        _idleNext: null,
        _idleStart: 1217681708,
        _onTimeout: null,
        _timerArgs: undefined,
        _repeat: null,
        _destroyed: true,
        [Symbol(refed)]: false,
        [Symbol(kHasPrimitive)]: false,
        [Symbol(asyncId)]: 4594018,
        [Symbol(triggerId)]: 4594013
      },
      [Symbol(kBuffer)]: null,
      [Symbol(kBufferCb)]: null,
      [Symbol(kBufferGen)]: null,
      [Symbol(kCapture)]: false,
      [Symbol(kSetNoDelay)]: true,
      [Symbol(kSetKeepAlive)]: true,
      [Symbol(kSetKeepAliveInitialDelay)]: 60,
      [Symbol(kBytesRead)]: 0,
      [Symbol(kBytesWritten)]: 0
    },
    _header: 'PUT /undefined HTTP/1.1\r\n' +
      'Accept: application/json, text/plain, */*\r\n' +
      'Content-Type: application/json;charset=UTF-8\r\n' +
      'User-Agent: axios/1.4.0\r\n' +
      'Accept-Encoding: gzip, compress, deflate, br\r\n' +
      'Host: localhost\r\n' +
      'Authorization: Basic cmVtb3ZlZDpyZW1vdmVk\r\n' +
      'Connection: close\r\n' +
      'Content-Length: 0\r\n' +
      '\r\n',
    _keepAliveTimeout: 0,
    _onPendingData: [Function: nop],
    agent: Agent {
      _events: [Object: null prototype],
      _eventsCount: 2,
      _maxListeners: undefined,
      defaultPort: 80,
      protocol: 'http:',
      options: [Object: null prototype],
      requests: [Object: null prototype] {},
      sockets: [Object: null prototype],
      freeSockets: [Object: null prototype] {},
      keepAliveMsecs: 1000,
      keepAlive: false,
      maxSockets: Infinity,
      maxFreeSockets: 256,
      scheduling: 'lifo',
      maxTotalSockets: Infinity,
      totalSocketCount: 1,
      [Symbol(kCapture)]: false
    },
    socketPath: undefined,
    method: 'PUT',
    maxHeaderSize: undefined,
    insecureHTTPParser: undefined,
    joinDuplicateHeaders: undefined,
    path: '/undefined',
    _ended: false,
    res: null,
    aborted: false,
    timeoutCb: null,
    upgradeOrConnect: false,
    parser: null,
    maxHeadersCount: null,
    reusedSocket: false,
    host: 'localhost',
    protocol: 'http:',
    _redirectable: [Circular *2],
    [Symbol(kCapture)]: false,
    [Symbol(kBytesWritten)]: 0,
    [Symbol(kNeedDrain)]: false,
    [Symbol(corked)]: 0,
    [Symbol(kOutHeaders)]: [Object: null prototype] {
      accept: [Array],
      'content-type': [Array],
      'user-agent': [Array],
      'accept-encoding': [Array],
      host: [Array],
      authorization: [Array]
    },
    [Symbol(errored)]: null,
    [Symbol(kHighWaterMark)]: 16384,
    [Symbol(kRejectNonStandardBodyWrites)]: false,
    [Symbol(kUniqueHeaders)]: null
  },
  _currentUrl: 'http://removed:removed@localhost/undefined',
  _timeout: null,
  [Symbol(kCapture)]: false
}
[Nest] 1  - 10/23/2023, 9:01:38 AM   ERROR [ExceptionsHandler] Converting circular structure to JSON
    --> starting at object with constructor 'Socket'
    |     property '_httpMessage' -> object with constructor 'ClientRequest'
    --- property 'socket' closes the circle
TypeError: Converting circular structure to JSON
    --> starting at object with constructor 'Socket'
    |     property '_httpMessage' -> object with constructor 'ClientRequest'
    --- property 'socket' closes the circle
    at JSON.stringify (<anonymous>)
    at ConsoleLogger.stringifyMessage (/home/node/app/node_modules/@nestjs/common/services/console-logger.service.js:142:66)
    at ConsoleLogger.formatMessage (/home/node/app/node_modules/@nestjs/common/services/console-logger.service.js:132:29)
    at /home/node/app/node_modules/@nestjs/common/services/console-logger.service.js:121:43
    at Array.forEach (<anonymous>)
    at ConsoleLogger.printMessages (/home/node/app/node_modules/@nestjs/common/services/console-logger.service.js:116:18)
    at ConsoleLogger.error (/home/node/app/node_modules/@nestjs/common/services/console-logger.service.js:51:14)
    at Logger.error (/home/node/app/node_modules/@nestjs/common/services/logger.service.js:44:75)
    at descriptor.value (/home/node/app/node_modules/@nestjs/common/services/logger.service.js:165:27)
    at Logger.error (/home/node/app/node_modules/@nestjs/common/services/logger.service.js:76:79)```

The issue names the published Dataset update flow and includes a Nest error trace showing a PUT request to /undefined; begin by tracing that update entry point and the request/error logging path. Reproduce the edit of Related Publications, then verify the update succeeds for an authorized published dataset without the circular-structure logging failure.