SACGF / SACGF/variantgrid

Somatic classification mode - autopopulate

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#976 0 comments 0 reactions 0 assignees View on GitHub
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Python
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Description

James says the following evidence keys activate namespaces, and activated namespaces changes what fields and options can appear:

Allele Origin: Somatic/Gemeline
Assertion Method: ACMG/Horak

We could make the form be set to what people want via auto population

* Auto populate these via sample type (eg germline/somatic)
* We could set via other lab-based properties, James says:

There’s an override setting of if you are primarily Germline or Somatic - that can be set at the Global / Org / Lab and User level - can use that as not used in Shariant.

In addition lab config allows default values to be provided for certain evidence keys - I think SA path already has some of those setup.

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