Biocommon HGVS validation of edit / ranges
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Biocommons HGVS
HGVS
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- Python
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Description
We are affected by [this HGVS bug](https://github.com/biocommons/hgvs/issues/279) ie we can import the following as classification HGVS:
NM_001637.3:c.1582_1583G>A
And because we replace outside references with our references, this has HgvsMatchRefAllele.calculated_ref = 'CC'
So it is imported as:
NM_001637.3(AOAH):c.1582_1583delGGinsA
Expected result: Fails validation
I think we should patch VG code in "Switch reference base" section (line 236) of hgvs_converter_biocommons as well as submit a patch to biocommons HGVS
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