RosettaCommons / RosettaCommons/RFdiffusion
The Colab notebook
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Description
Hi RFdiffusion team,
Does the colab notebook work properly to design something against a user-specific target (pdb file)?
The hint at the end says "leave blank to get an upload prompt", however, the notebook doesn't do that. Although it was set in the function to do so
def get_pdb(pdb_code=None):
if pdb_code is None or pdb_code == "":
upload_dict = files.upload()
it doesn't!
Even if I enter a PDB ID and or any random word, it keeps designing something irrelevant.
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Research direction
Start in the Colab notebook at the mentioned get_pdb(pdb_code=None) function and reproduce the behavior with a blank value, a PDB ID, and an invalid word. Done means a blank input opens the upload prompt and a supplied target is used for the resulting design.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100