RosettaCommons / RosettaCommons/RFdiffusion
AttributeError: 'SelfConditioning' object has no attribute 'idx_pdb'
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Description
Hi All! I met a problem when I tried to run the design_macrocyclic_binder.sh in the example directory of rfdiffusion, Any advise?Thanks for any reply!
Error executing job with overrides: ['inference.output_prefix=./outputs/diffused_binder_cyclic2', 'inference.num_designs=10', 'contigmap.contigs=[12-18 A3-117/0]', 'inference.input_pdb=./input_pdbs/7zkr_GABARAP.pdb', 'inference.cyclic=True', 'diffuser.T=50', 'inference.cyc_chains=a', "ppi.hotspot_res=['A51','A52','A50','A48','A62','A65']", 'preprocess.str_self_cond=False']
Traceback (most recent call last):
File "/mnt/elements/protein_design/RFdiffusion1/20250927/RFdiffusion/examples/../scripts/run_inference.py", line 144, in main
idx_pdb=sampler.idx_pdb
AttributeError: 'SelfConditioning' object has no attribute 'idx_pdb'
Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.
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Research direction
Start at scripts/run_inference.py around line 144 and reproduce the reported design_macrocyclic_binder.sh command with HYDRA_FULL_ERROR=1 enabled. Trace how the sampler becomes a SelfConditioning object and why idx_pdb is unavailable; the issue is done when the example runs without this AttributeError.
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Assessment
- Tech stack
- python
- Domain
- bioinformatics, machine-learning
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100