RosettaCommons / RosettaCommons/RFdiffusion

Example of Improved Protein Binder Design Using Beta-Pairing Targeted RFdiffusion

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Dominant language
Python
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Description

Dear authors,

I hope this message finds you well. I recently read your preprint “Improved protein binder design using beta-pairing targeted RFdiffusion” (doi: 10.1101/2024.10.11.617496) and found the work both exciting and inspiring.

I am very interested in exploring and reproducing the beta-pairing targeted binder design approach you developed. Would it be possible for you to share an example dataset or implementation—perhaps via GitHub—that demonstrates the workflow or inputs/outputs described in your study? Such an example would be invaluable for understanding and applying your method correctly.

I truly appreciate your time and consideration, and I greatly admire your contributions to the field of protein design.

Thank you in advance for your help.

Warm regards,
Luke

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
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Research direction

No repository file, test, or entry point is named. Start by reading the linked preprint and comparing its beta-pairing targeted binder design workflow with the repository's documented inputs and outputs. The issue would be done when a concrete example dataset or implementation is defined and shared, but its scope is not specified.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics, machine-learning
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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