RosettaCommons / RosettaCommons/RFdiffusion

Issue when trying motif scaffolding with target

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#351 2 comments 0 reactions 0 assignees View on GitHub

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Dominant language
Python
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Description

When running example design_motifscaffolding_with_target.sh I have a problem:
no viable alternative at input '[A25-109/0'
See https://hydra.cc/docs/1.2/advanced/override_grammar/basic for details

Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by running example design_motifscaffolding_with_target.sh and consult the linked Hydra override grammar documentation. Re-run with HYDRA_FULL_ERROR=1 to locate the parsing failure; done means the example accepts its target motif-scaffolding input without the reported no viable alternative error.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
machine-learning
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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