RosettaCommons / RosettaCommons/RFdiffusion

Zero-shot mutation effect prediction on protein stability using RFdiffusion (Similar to RFjoint in RFpaper)

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Python
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Description

Hi RFdiffusion team,

I came across the paper "Zero-shot mutation effect prediction on protein stability and function using RoseTTAFold", where RFjoint was used for zero-shot mutation effect prediction.

I was wondering:

  1. Is it possible to perform zero-shot mutation effect prediction on protein stability using RFdiffusion?
  2. If not currently supported, would it be feasible to extend RFdiffusion for such a task?
  3. Do you have any recommendations on how one might adapt RFdiffusion for this purpose?
  4. Would you suggest using RFjoint instead for such analyses, or is there a better alternative?

I appreciate any insights you can provide on this! Thanks for your amazing work on RFdiffusion.

Best regards,
Ali

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Research direction

The issue names no files, tests, or entry points and asks whether RFdiffusion can support zero-shot mutation effect prediction. Start by reviewing the cited RFjoint and RoseTTAFold work alongside the repository's existing prediction workflows. A concrete implementation target and maintainer guidance would be needed before defining what done means.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics, machine-learning
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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