RosettaCommons / RosettaCommons/RFdiffusion
why default pdb db is set to examples/input_pdbs/1qys.pdb
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Description
Hello
when runnig run_inference.py inference.output_prefix=temp/test 'contigmap.contigs=[150-150] default pdb is set to $PREFIX/lib/python<PYTHON_VERSION>/site-packages/rfdiffusion/inference/../../examples/input_pdbs/1qys.pdb
is there a reason for that behaviour ?
instead of setting a default pdb db when none is given, maybee you may want to enforce that inference.input_pdb is mandatory
regards
Eric
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Research direction
Start by reproducing the command shown with run_inference.py and inspect how inference.input_pdb is selected when it is omitted. Determine whether the documented default should be removed and input_pdb enforced as mandatory; done means the behavior is intentional and covered by an appropriate validation or usage check.
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Assessment
- Tech stack
- python
- Domain
- cli
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100