RosettaCommons / RosettaCommons/RFdiffusion

Please Help, I am still learning and need advising

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Python
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Description

python .\scripts\run_inference.py inference.output_prefix=example_outputs/design_01 inference.input_pdb=C:\Users\myuser\RFdiffusion\examples\input_pdbs\design_01.pdb "contigmap.contigs=[A1-6\16-16\A23-32\12-12\A45-48\12-12\A61-601]" inference.num_designs=10

Hello, the above is a backbone I am trying to recreate, to make the n-terminal more hydrophobic. I want to keep certain motifs, and then add a certain amount of random sampling but with the exact number of residues (i.e. the 16-16) in between the motifs and conserved area. However, I keep getting this error:

ValueError: invalid literal for int() with base 10: '6\16'

Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.

I am unsure if I am inputting the command wrong, or if I should include the inpaint command also? Can someone please guide me on this, I would appreciate it so much.

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Research direction

Start with scripts/run_inference.py and reproduce the command shown in the issue, using HYDRA_FULL_ERROR for the complete traceback. Determine whether the failure is caused by the contigmap argument format and whether an inpaint command is relevant; done means the correct invocation and expected usage are clearly documented.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli, machine-learning
Issue type
Documentation
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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