RosettaCommons / RosettaCommons/RFdiffusion
Computing the TM score for a newly generated protein
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- Dominant language
- Python
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Description
Hi,
I would like to compute the TM-score between my newly generated protein and the entire PDB dataset, similarly to what you show in Figure 2b. Could you please point out where I can find the code for that?
Thanks!
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Research direction
The issue names Figure 2b, TM-score computation, newly generated proteins, and the entire PDB dataset, but no files or tests. Start by locating the code or workflow used to produce Figure 2b and trace how TM-scores are computed against PDB structures. Done means documenting the relevant entry point and the steps needed to reproduce that comparison.
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Assessment
- Tech stack
- python
- Domain
- bioinformatics, machine-learning
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100