RosettaCommons / RosettaCommons/PyRosetta.notebooks
Request to add tutorial for building cyclic peptides
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- Dominant language
- Jupyter Notebook
- Stars
- 709
- Forks
- 173
- Avg merge
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- Merged PRs (30d)
- 2
Description
I saw david baker's work on building a large ring from scratch in cell, which made me very interested. I looked at the code provided in their attachment materials. It is obvious that it is not compatible with pyrosetta 4 now. Multiple functions and classes are no longer the same. This caused me great pain when trying to reproduce it. I humbly request you to write a tutorial on how to build a cyclic peptide.
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Review the attachment materials referenced in the issue and compare their functions and classes with the current PyRosetta 4 interfaces. The work is complete when a reproducible tutorial for building cyclic peptides is available and works with the current version.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics, documentation
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100