RosettaCommons / RosettaCommons/PyRosetta.notebooks
How can I execute this command in pyrosetta?
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 709
- Forks
- 173
- Avg merge
- 5m
- Merged PRs (30d)
- 2
Description
antibody_designer.linuxgccrelease -s my_ab.pdb -seq_design_cdrs L1 L2 H3 \
-graft_design_cdrs L1 L2 -light_chain kappa -design_H3_stem -inner_kt 2.0 \
-outer_kt 2.0 -seq_design_profile_samples 5 -nstruct 5 -out:prefix tutD5_
<AntibodyDesignMover name="RAbD" seq_design_cdrs="L1,L3,H1,H3" mintype="relax"
inner_kt="2.0" outer_kt="2.0"/>
https://nbviewer.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/12.02-RosettaAntibodyDesign-RAbD.ipynb
This example should be executed in rosetta, what I want to know is how to execute this command in pyrosetta. Thanks
Below is the test.py script for my current environment
@ajasja @momeara @jueseph @pjsteiner @danielvarela
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the linked 12.02-RosettaAntibodyDesign-RAbD.ipynb notebook and the reported test.py environment. Determine how the displayed Rosetta command and RAbD example should be executed in PyRosetta, then document a runnable example and a clear way to verify it works.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, python
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100