RosettaCommons / RosettaCommons/PyRosetta.notebooks
How to customize the scoring function?
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- Dominant language
- Jupyter Notebook
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Description
For example, I want to use python to customize a dynamic custom scoring function on top of the scoring function that comes with pyrosetta, and I've looked at the tutorials and can't seem to find a clear way to solve this problem. A clear answer would be greatly appreciated.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Review the existing tutorials and notebooks to identify how PyRosetta's built-in scoring function is exposed in Python. Document a clear approach for layering a dynamic custom scoring function on top of it, with a runnable notebook example showing the expected result.
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Assessment
- Tech stack
- jupyter-notebook, python
- Domain
- bioinformatics, documentation
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100