RosettaCommons / RosettaCommons/PyRosetta.notebooks
Linking Pymol with Pyrosetta on windows 10 using UBUNTU
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- Dominant language
- Jupyter Notebook
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Description
Hello,
I am very new to protein modeling and I am trying to get stuck into some tutorials but I am having difficulties setting up.
I am using the windows subsystem for linux to run pyrosetta. I have gotten to the point where I can create a virutal enviroment via to run python 3.12, pyrosetta and pymol. When I open pymol I can successfully link pymol and rosetta together via the pymol mover. However, I am then stuck in the terminal not being able to input any commands (see attached). Is there anyway to get back to pyrosetta from this point in the same terminal to input commands? When I open a new terminal with pyrosetta it is not linked with pymol.
any help would be appreciated.
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Research direction
No repository files, tests, or entry points are mentioned. Start by reviewing the WSL Ubuntu, Python 3.12, PyRosetta, and PyMOL setup described in the issue and the attached screenshot, then establish a reproducible terminal state; done would mean documenting or correcting the workflow so PyRosetta and PyMOL remain linked while commands can be entered.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, python, ubuntu
- Domain
- bioinformatics, operating-systems
- Issue type
- Bug
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 15/100