ReactionMechanismGenerator / ReactionMechanismGenerator/ARC

ts yaml from ARC jobs

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Good first issue Type: Feature
Dominant language
Python
Stars
51
Forks
25
Avg merge
4d 5h
Merged PRs (30d)
15

Description

While currently ARC can't do ts yaml, once arkane_ts_yaml is merged on RMG-Py it still won't be able to generate ts yaml because it isn't providing arkane with proper molecule objects for each reactant and product.

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by tracing ARC's transition-state YAML generation and the molecule objects it passes to Arkane for each reactant and product. Compare the expected handoff after arkane_ts_yaml is merged; done means ARC can generate valid TS YAML from ARC jobs with proper molecule objects.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
backend
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
30/100

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