Specifying both SMILES and xyz for HNO2 results in a wrong Molecule

Running a species defined as:

species:
  - label: HNO2
    smiles: '[O-][NH+]=O'
    multiplicity: 1
    xyz: |
      O      -1.01386486   -0.68945953    0.00479924
      N      -0.00259331    0.01680748    0.00034704
      O       1.17442937   -0.35117532   -0.02628640
      H      -0.15797121    1.02382738    0.02114012

results in a wrong Molecule object representation:

Considering species: HNO2
<Molecule "[O]N[O]">

with invalid adj list:

1 O u0 p2 c0 {3,S}
2 O u0 p2 c0 {3,S}
3 N u0 p1 c0 {1,S} {2,S} {4,S}
4 H u0 p0 c0 {3,S}

This causes ARC to identify H_Abstraction reactions from HNO2 as Disprop.

The bypass for now is to not use the xyz when defining the species, but the perception issue should be looked at.

Reproduce the HNO2 species definition with both the SMILES and xyz shown in the issue, then inspect the molecule perception path that produces the displayed representation and adjacency list. Done means the resulting Molecule preserves the intended structure and ARC no longer identifies the corresponding H-abstraction reaction as Disprop.