eccodes dependency is not correctly installed when using uv for development
Open
Nobody has claimed this yet.
status: needs classification
type: bug
- Dominant language
- Python
- Stars
- 402
- Forks
- 134
- PR merge metrics
- No merged PRs in 30d
Description
Version Checks (indicate both or one)
-
I have confirmed this bug exists on the lastest release of atlite.
-
I have confirmed this bug exists on the current
masterbranch of atlite.
Issue Description
Since [v 0.4.1] atlite uses grib to download data from CDS by default. This requires the cdfgrib backend for xarray. This in turn requires the EcCodes library to be present on the system.
This is not well documented, and results in failed downloads, and the test suite failing by default, without an explicit error message.
Reproducible Example
git clone https://github.com/PyPSA/atlite
cd atlite
uv sync --extra dev
uv run pytest test/ -v
Fails with:
ValueError: unrecognized engine 'cfgrib' must be one of your download engines: ['netcdf4', 'h5netcdf', 'scipy', 'pydap', 'store'].
Expected Behavior
tests pass
Installed Versions
appdirs==1.4.4
apsw==3.43.0.0
argcomplete==3.1.4
asttokens==2.4.1
async-timeout==4.0.3
attrs==23.2.0
Babel==2.10.3
bcc==0.29.1
bcrypt==3.2.2
beautifulsoup4==4.12.3
blinker==1.7.0
Brlapi==0.8.5
Brotli==1.1.0
certifi==2023.11.17
chardet==5.2.0
click==8.1.6
cloud-init==25.3
colorama==0.4.6
command-not-found==0.3
configobj==5.0.8
contourpy==1.0.7
cryptography==41.0.7
css-parser==1.0.10
cssselect==1.2.0
cupshelpers==1.0
cycler==0.11.0
dbus-python==1.3.2
decorator==5.1.1
defer==1.0.6
distro==1.9.0
distro-info==1.7+build1
dnspython==2.6.1
duplicity==2.1.4
executing==2.0.1
fasteners==0.18
feedparser==6.0.10
fonttools==4.46.0
fs==2.4.16
html2text==2024.2.26
html5-parser==0.4.12
html5lib==1.1
httplib2==0.20.4
idna==3.6
ifaddr==0.2.0
ipython==8.20.0
jedi==0.19.1
jeepney==0.8.0
Jinja2==3.1.2
jsonpatch==1.32
jsonpointer==2.0
jsonschema==4.10.3
kiwisolver==0.0.0
language-selector==0.1
launchpadlib==1.11.0
lazr.restfulclient==0.14.6
lazr.uri==1.0.6
libevdev==0.5
louis==3.29.0
lxml==5.2.1
lz4==4.0.2+dfsg
Mako==1.3.2.dev0
Markdown==3.5.2
markdown-it-py==3.0.0
MarkupSafe==2.1.5
matplotlib==3.6.3
matplotlib-inline==0.1.6
mdurl==0.1.2
mechanize==0.4.9
meson==1.3.2
monotonic==1.6
mpmath==0.0.0
msgpack==1.0.3
netaddr==0.8.0
netifaces==0.11.0
numpy==1.26.4
oauthlib==3.2.2
olefile==0.46
packaging==24.0
paramiko==2.12.0
parso==0.8.3
pexpect==4.9.0
pillow==10.2.0
pipx==1.4.3
platformdirs==4.2.0
prompt-toolkit==3.0.43
psutil==5.9.8
ptyprocess==0.7.0
pure-eval==0.0.0
py7zr==0.11.3+dfsg
pycairo==1.25.1
pychm==0.8.6
pycryptodomex==3.20.0
pycups==2.0.1
Pygments==2.17.2
PyGObject==3.48.2
PyJWT==2.7.0
PyNaCl==1.5.0
pyparsing==3.1.1
PyQt6==6.6.1
PyQt6-sip==13.6.0
PyQt6-WebEngine==6.6.0
pyrsistent==0.20.0
pyserial==3.5
python-apt==2.7.7+ubuntu5.2
python-dateutil==2.8.2
python-debian==0.1.49+ubuntu2
pytz==2024.1
pyudev==0.24.0
pyxdg==0.28
PyYAML==6.0.1
regex==2022.10.31
repoze.lru==0.7
requests==2.31.0
rich==13.7.1
rofication==1.2.2
Routes==2.5.1
SciPy==1.11.4
setuptools==68.1.2
sgmllib3k==1.0.0
six==1.16.0
soupsieve==2.5
stack-data==0.6.3
sympy==1.12
systemd-python==235
texttable==1.6.7
traitlets==5.5.0
types-aiofiles==23.2
types-aws-xray-sdk==2.12
types-beautifulsoup4==4.12
types-bleach==6.1
types-boltons==23.0
types-boto==2.49
types-braintree==4.24
types-cachetools==5.3
types-caldav==1.3
types-cffi==1.16
types-chevron==0.14
types-click-default-group==1.2
types-click-spinner==0.1
types-colorama==0.4
types-commonmark==0.9
types-console-menu==0.8
types-croniter==2.0
types-dateparser==1.1
types-decorator==5.1
types-Deprecated==1.2
types-dockerfile-parse==2.0
types-docopt==0.6
types-docutils==0.20
types-editdistance==0.6
types-entrypoints==0.4
types-ExifRead==3.0
types-first==2.0
types-flake8-2020==1.8
types-flake8-bugbear==23.9.16
types-flake8-builtins==2.2
types-flake8-docstrings==1.7
types-flake8-plugin-utils==1.3
types-flake8-rst-docstrings==0.3
types-flake8-simplify==0.21
types-flake8-typing-imports==1.15
types-Flask-Cors==4.0
types-Flask-Migrate==4.0
types-Flask-SocketIO==5.3
types-fpdf2==2.7.4
types-gdb==12.1
types-google-cloud-ndb==2.2
types-greenlet==3.0
types-hdbcli==2.18
types-html5lib==1.1
types-httplib2==0.22
types-humanfriendly==10.0
types-ibm-db==3.2
types-influxdb-client==1.38
types-inifile==0.4
types-JACK-Client==0.5
types-jmespath==1.0
types-jsonschema==4.19
types-keyboard==0.13
types-ldap3==2.9
types-libsass==0.22
types-Markdown==3.5
types-mock==5.1
types-mypy-extensions==1.0
types-mysqlclient==2.2
types-netaddr==0.9
types-oauthlib==3.2
types-openpyxl==3.1
types-opentracing==2.4
types-paho-mqtt==1.6
types-paramiko==3.3
types-parsimonious==0.10
types-passlib==1.7
types-passpy==1.0
types-peewee==3.17
types-pep8-naming==0.13
types-pexpect==4.8
types-pika-ts==1.3
types-Pillow==10.1
types-playsound==1.3
types-pluggy==1.2.0
types-polib==1.2
types-portpicker==1.6
types-protobuf==4.24
types-psutil==5.9
types-psycopg2==2.9
types-pyasn1==0.5
types-pyaudio==0.2
types-PyAutoGUI==0.9
types-pycocotools==2.0
types-pycurl==7.45.2
types-pyfarmhash==0.3
types-pyflakes==3.1
types-Pygments==2.16
types-pyinstaller==6.1
types-pyjks==20.0
types-PyMySQL==1.1
types-pynput==1.7
types-pyOpenSSL==23.3
types-pyRFC3339==1.1
types-PyScreeze==0.1.29
types-pyserial==3.5
types-pysftp==0.2
types-pytest-lazy-fixture==0.6
types-python-crontab==3.0
types-python-datemath==1.5
types-python-dateutil==2.8
types-python-gflags==3.1
types-python-jose==3.3
types-python-nmap==0.7
types-python-slugify==8.0
types-python-xlib==0.33
types-pytz==2023.3.post1
types-pywin32==306
types-pyxdg==0.28
types-PyYAML==6.0
types-qrcode==7.4
types-redis==4.6.0
types-regex==2023.10.3
types-requests==2.31
types-requests-oauthlib==1.3
types-retry==0.9
types-s2clientprotocol==5
types-seaborn==0.13
types-Send2Trash==1.8
types-setuptools==68.2
types-simplejson==3.19
types-singledispatch==4.1
types-six==1.16
types-slumber==0.7
types-stdlib-list==0.8
types-stripe==3.5
types-tabulate==0.9
types-tensorflow==2.12
types-toml==0.10
types-toposort==1.10
types-tqdm==4.66
types-translationstring==1.4
types-tree-sitter==0.20.1
types-tree-sitter-languages==1.8
types-ttkthemes==3.2
types-tzlocal==5.1
types-ujson==5.8
types-untangle==1.2
types-usersettings==1.1
types-uWSGI==2.0
types-vobject==0.9
types-waitress==2.1
types-WebOb==1.8
types-whatthepatch==1.0
types-workalendar==17.0
types-WTForms==3.1
types-xmltodict==0.13
types-zstd==1.5
types-zxcvbn==4.4
typing_extensions==4.10.0
ubuntu-drivers-common==0.0.0
ubuntu-pro-client==8001
ufoLib2==0.16.0
ufw==0.36.2
unattended-upgrades==0.1
unicodedata2==15.1.0
urllib3==2.0.7
usb-creator==0.3.16
userpath==1.9.1
wadllib==1.3.6
wcwidth==0.2.5
webencodings==0.5.1
WebOb==1.8.7
wheel==0.42.0
xdg==5
xkit==0.0.0
xxhash==0.0.0
zeroconf==0.131.0
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by running uv sync --extra dev followed by uv run pytest test/ -v to reproduce the missing cfgrib engine failure. Review the dependency configuration used by the uv development setup and the tests under test/; done means the development install provides the required backend and the test suite passes.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- build-system, testing-qa
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 55/100