Project-MONAI / Project-MONAI/tutorials

maisi: occuring NaN during the diffusion model training

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Description

Hi,

When I train the diffusion model with the trained VAE autoencoder weights, I encounter the issue of NaN loss. The following is part log:

lr: [0.0001]
lr: [0.0001]
Epoch 201 train_vae_loss 0.039707845827617515: {'recons_loss': 0.015235490621573968, 'kl_loss': 85897.05040993346, 'p_loss': 0.05294216721683401}.
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
lr: [0.0001]
Epoch 202 train_vae_loss 0.036837538356057416: {'recons_loss': 0.013532256549082612, 'kl_loss': 84689.69741415161, 'p_loss': 0.049454373551865494}.
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 203 train_vae_loss 0.04066830881296869: {'recons_loss': 0.01579887273158354, 'kl_loss': 86930.33920508555, 'p_loss': 0.053921340536255344}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 204 train_vae_loss 0.04466726511873636: {'recons_loss': 0.017411270744553255, 'kl_loss': 86347.42582580798, 'p_loss': 0.06207083930534102}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 205 train_vae_loss 0.039213172850076874: {'recons_loss': 0.014744859089642877, 'kl_loss': 85096.7134475998, 'p_loss': 0.05319547471891338}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
lr: [0.0001]
Epoch 206 train_vae_loss 0.038383807665236705: {'recons_loss': 0.014200327562047841, 'kl_loss': 85760.27710610742, 'p_loss': 0.05202484130859375}.
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 207 train_vae_loss 0.03932591601622308: {'recons_loss': 0.014606543448346422, 'kl_loss': 87033.87854978612, 'p_loss': 0.05338661570966017}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
lr: [0.0001]
Epoch 208 train_vae_loss 0.058224454522186636: {'recons_loss': 0.022603081671181118, 'kl_loss': 143004.20642229088, 'p_loss': 0.07106984069592145}.
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 209 train_vae_loss 0.04279889678179953: {'recons_loss': 0.016451959535408723, 'kl_loss': 91421.0720725404, 'p_loss': 0.057349433463789214}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 210 train_vae_loss 0.04419510093541189: {'recons_loss': 0.017602585414566184, 'kl_loss': 88753.12170270912, 'p_loss': 0.05905734450191599}.
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 210 val_vae_loss nan: {'recons_loss': nan, 'kl_loss': nan, 'p_loss': nan}.
lr: [0.0001]
Epoch 211 train_vae_loss 0.047102449947657665: {'recons_loss': 0.018618881483757056, 'kl_loss': 99892.8082075808, 'p_loss': 0.061647625477141754}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 212 train_vae_loss 0.04109727745322826: {'recons_loss': 0.015783639634453017, 'kl_loss': 88632.56267823195, 'p_loss': 0.054834605169840185}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 213 train_vae_loss 0.04030142836448789: {'recons_loss': 0.015340764416353387, 'kl_loss': 87118.63764704135, 'p_loss': 0.054162667278101234}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 214 train_vae_loss 0.040564939826983476: {'recons_loss': 0.015572800811826333, 'kl_loss': 89774.16198312737, 'p_loss': 0.05338240938948134}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 215 train_vae_loss 0.04143597853471239: {'recons_loss': 0.01541382184043215, 'kl_loss': 96709.1665948788, 'p_loss': 0.054504133449307865}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 216 train_vae_loss 0.04318358794278379: {'recons_loss': 0.015925193886261985, 'kl_loss': 91295.16699590067, 'p_loss': 0.06042959118977246}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 217 train_vae_loss 0.05705382756280092: {'recons_loss': 0.020152890289860986, 'kl_loss': 109472.0783923479, 'p_loss': 0.08651243144568381}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
lr: [0.0001]
Epoch 218 train_vae_loss nan: {'recons_loss': nan, 'kl_loss': nan, 'p_loss': nan}.
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 219 train_vae_loss nan: {'recons_loss': nan, 'kl_loss': nan, 'p_loss': nan}.
lr: [0.0001]
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]
Epoch 220 train_vae_loss nan: {'recons_loss': nan, 'kl_loss': nan, 'p_loss': nan}.
Save trained autoencoder to ./models/vae/pretrain/20241128190854/autoencoder.pt
Save trained discriminator to ./models/vae/pretrain/20241128190854/discriminator.pt
lr: [0.0001]

Thanks a lot.

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Research direction

Start with the Maisi diffusion-model training workflow using the trained VAE autoencoder weights, and compare the training and validation logs around epochs 210–220. Investigate the transition from finite losses to NaN values and document the conditions that reproduce it. Done means identifying a reproducible cause or narrowing it to the training configuration or data.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook
Domain
machine-learning
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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