Project-MONAI / Project-MONAI/MONAI

Auto3dSeg integration test failed

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bug
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Description


[2025-02-18T14:51:32.598Z] ======================================================================

[2025-02-18T14:51:32.598Z] ERROR: test_ensemble (__main__.TestEnsembleBuilder)

[2025-02-18T14:51:32.598Z] ----------------------------------------------------------------------

[2025-02-18T14:51:32.598Z] Traceback (most recent call last):

[2025-02-18T14:51:32.598Z]   File "/home/jenkins/agent/workspace/Monai-notebooks/MONAI/tests/integration/test_auto3dseg_ensemble.py", line 174, in test_ensemble

[2025-02-18T14:51:32.598Z]     algo.train(_train_param)

[2025-02-18T14:51:32.598Z]   File "/tmp/tmpjr4iivmw/workdir/algorithm_templates/dints/scripts/algo.py", line 496, in train

[2025-02-18T14:51:32.598Z]   File "/home/jenkins/agent/workspace/Monai-notebooks/MONAI/monai/apps/auto3dseg/bundle_gen.py", line 277, in _run_cmd

[2025-02-18T14:51:32.598Z]     return run_cmd(cmd.split(), run_cmd_verbose=True, env=ps_environ, check=True)

[2025-02-18T14:51:32.598Z]   File "/home/jenkins/agent/workspace/Monai-notebooks/MONAI/monai/utils/misc.py", line 892, in run_cmd

[2025-02-18T14:51:32.598Z]     return subprocess.run(cmd_list, **kwargs)

[2025-02-18T14:51:32.598Z]   File "/usr/lib/python3.10/subprocess.py", line 526, in run

[2025-02-18T14:51:32.598Z]     raise CalledProcessError(retcode, process.args,

[2025-02-18T14:51:32.598Z] subprocess.CalledProcessError: Command '['python', '/tmp/tmpjr4iivmw/workdir/dints_0/scripts/train.py', 'run', "--config_file='/tmp/tmpjr4iivmw/workdir/dints_0/configs/hyper_parameters.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/hyper_parameters_search.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/network.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/network_search.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/transforms_infer.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/transforms_train.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/transforms_validate.yaml'", '--training#num_images_per_batch=2', '--training#num_epochs=2', '--training#num_epochs_per_validation=1']' returned non-zero exit status 1.

[2025-02-18T14:51:32.598Z] 

[2025-02-18T14:51:32.598Z] ----------------------------------------------------------------------

python -m tests.integration.test_auto3dseg_ensemble

cc @mingxin-zheng

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by running python -m tests.integration.test_auto3dseg_ensemble and inspect tests/integration/test_auto3dseg_ensemble.py, especially test_ensemble. Follow the failing command through monai/apps/auto3dseg/bundle_gen.py; the payload shows only the non-zero exit status, so the underlying training error still needs to be identified. Done means the integration test completes successfully.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
machine-learning, testing-qa
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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