Project-MONAI / Project-MONAI/MONAI
Pathology Raw Annotations to Patch-level Annotations
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- Dominant language
- Python
- Stars
- 8.7k
- Forks
- 1.6k
- Avg merge
- 5d 1h
- Merged PRs (30d)
- 20
Description
Is your feature request related to a problem? Please describe.
In many pipelines of digital pathology, we are dealing with patch-level annotations like existence of a tumor; however, these patch-level annotations are usually derived from annotations on the whole slide images, typically some polygons that distinguish the tumor vs normal regions. It would be great to implement the functionality to enable annotations for patches at arbitrary locations and various patch sizes.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue names no files, tests, or entry points. Start by locating the existing whole-slide annotation and patch-processing functionality, then define the inputs, outputs, arbitrary locations, and patch-size behavior before implementation. Done means reliable patch-level annotations can be generated from polygon annotations across the requested locations and sizes.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- computer-vision
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100