PankratzLab / PankratzLab/DonorCheck

Add support for LinkSeq XML

Open
#4 2 comments 1 reaction 1 assignee View on GitHub

@kaitlinrenee is already working on this.

Since Jun 24, 2019.

Dominant language
Java
Stars
2
Forks
0
PR merge metrics
No merged PRs in 30d

Description

Referenced here.

XML Sections to parse

It looks like the XML has an labAssignmentSection block at the top which includes the assigned typings. These can be read and passed to a ValidationModelBuilder to populate the core typing data.

For haplotype information, there is a testResultsSection that has all the possible alleles for each locus, which will be used to populate haplotype information.

Implementation Notes
Goals
  • Assigned typing parsing works
  • Haplotype parsing works

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.