PEtab-dev / PEtab-dev/petab_test_suite
Add tests with compartments updates in condition table
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- Dominant language
- Python
- Stars
- 6
- Forks
- 3
- PR merge metrics
- No merged PRs in 30d
Description
Compartment size assignments are tricky since concentrations need to be updated via conversion to amounts. Should also cover compartment size updates due to changes in states/parameters that occur in size assignments, as well as concurrent update of compartment size AND concentration (in which case no conversion should be performed, if assignment in the condition table are handled the same as event/initial assignments).
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file or test path is named in the issue. Start by locating the existing condition-table test cases and run them, then trace how compartment size and concentration assignments are represented. Done means tests cover conversion to amounts, size changes caused by state or parameter updates, and simultaneous size and concentration assignments without conversion.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- testing-qa
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100