PEtab-dev / PEtab-dev/petab_select
Use different graph plotting library
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- Dominant language
- Python
- Stars
- 14
- Forks
- 1
- PR merge metrics
- No merged PRs in 30d
Description
Currently, graph_iteration_layers labels/node sizes are manually handled and probably suboptimal in most cases. bbox makes "node-like" shapes that adapt to the node label size, but cannot be colored for each node easily via the draw_networkx command -- plotting one node at a time might work.
Alternative libraries suitable for graph visualization:
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Locate the graph_iteration_layers entry point and inspect how it currently uses draw_networkx and bbox. Compare the proposed netgraph and graphviz options, then define and verify a replacement that handles labels, node sizes, and per-node colors.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Refactor
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100