Allow species in `yValues` of the visualization table
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specification change
visualization
- Dominant language
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- Stars
- 66
- Forks
- 16
- Avg merge
- 3h 2m
- Merged PRs (30d)
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Description
Which problem would you like to address? Please describe.
Atm it seems like only observables can be plotted on the y axis. It would be nice to also be able to plot species.
Additional context
This would be helpful to visually check
- if the behavior of non-observed species for a given optimization result seems biologically reasonable
- how species differ between experimental conditions
- how species differ between different optimization results, etc.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the visualization table's handling of yValues and review the linked PEtab data-format documentation to understand the current observable-only constraint. Done means species can be selected in yValues and visualized for the comparison cases described in the issue, with the relevant behavior covered by the project's tests.
Written by the indexing model from the issue text.
Assessment
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100