OpenFreeEnergy / OpenFreeEnergy/openfe_analysis

Parallelization of RMSD analyses

Open
#102 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
Python
Stars
20
Forks
2
PR merge metrics
No merged PRs in 30d

Description

We're currently setting _analysis_algorithm_is_parallelizable=False. We should look into parallelism.

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the RMSD analysis entry point and the _analysis_algorithm_is_parallelizable setting. Read how analyses are currently scheduled and identify the constraints that make RMSD non-parallelizable. Done means parallel execution is supported for RMSD analyses and its behavior is verified by appropriate tests.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data, performance
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Quiet
Clarity
Needs clarification
Newbie friendliness
30/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.