OpenFreeEnergy / OpenFreeEnergy/openfe

Allow for multiple alchemical waters

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#660 4 comments 2 reactions 0 assignees View on GitHub

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Dominant language
Python
Stars
331
Forks
56
Avg merge
3d 9h
Merged PRs (30d)
13

Description

From today's Perses-OpenFE call - it might be good, once we've finished up validating the alchemical water code, to see if we can support net charge changes > 1.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the alchemical water implementation and its validation code, then determine how net charge changes are currently represented and limited. Define what supporting charge changes greater than one means for multiple alchemical waters and validate the behavior against the existing alchemical water checks; the issue names no files or tests.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
backend
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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