OpenFreeEnergy / OpenFreeEnergy/openfe

use cinnabar for dg calculation in gather

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Dominant language
Python
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332
Forks
56
Avg merge
3d 9h
Merged PRs (30d)
13

Description

as raised by @hannahbaumann - this functionality in gather predates the femap implementation in cinnabar, and we could (should) be using that instead.

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating gather's existing dG calculation and compare it with cinnabar's femap implementation. Confirm the expected inputs and outputs, then update gather to use that implementation and run the relevant gather tests. Done means gather uses the cinnabar functionality without changing its expected results.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Refactor
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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