OpenFreeEnergy / OpenFreeEnergy/openfe-benchmarks

Add system group and system name to network mappings

Open
#124 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
Python
Stars
13
Forks
2
Avg merge
2d 19h
Merged PRs (30d)
8

Description

Is your feature request related to a problem? Please describe.
To track the system group and name each edge is taken from, we currently add the information into the edge mapping annotations while building the transformations, it would be better if we could update all of the networks to have this information already to ensure its present in the networks regardless of the script used to generate them.

Describe the solution you'd like

Describe alternatives you've considered

Additional context

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the network-mapping generation code and the transformation logic that currently adds system group and name to edge annotations. Trace how each network is built and identify where this metadata can be populated consistently. Done means every network contains the system group and system name without relying on a particular generation script.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
48/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.