ACHILLES in ATLAS Data Sources, Drug Exposure Report
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- Dominant language
- Java
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Description
We keep coming across this issue. For data partners that have drug exposure data on the ingredient level . . . in ACHILLES some how acetaminophen gets associated to the “ingredient” of “ALKA-SELTZER PLUS COLD AND COUGH COOL MENTHOL - dextromethorphan hydrobromide, chlorpheniramine maleate, acetaminophen, phenylephrine hydrochloride capsule, liquid filled”. This Alk-seltzer is a classification concept - 44361362.
In my database I see it for another component, dextromethorphan
So the weird thing is, why does ACHILLES for this ingredient Drug Exposure – instead of mapping to itself, maps to this classification. Do you know what query is getting run here?
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the ACHILLES Drug Exposure report query and trace how ingredient-level drug exposure is matched to concepts, focusing on classification concept 44361362 and the listed dextromethorphan and acetaminophen records. Done means the mapping behavior is explained and, if incorrect, the report uses the intended ingredient relationship.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- backend, databases
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100