OHDSI / OHDSI/FeatureExtraction
Can't exclude concept id 900000010 (Mental Health Substance Abuse Coverage Indicator)
Nobody has claimed this yet.
- Dominant language
- R
- Stars
- 74
- Forks
- 63
- PR merge metrics
- No merged PRs in 30d
Description
I'm using FeatureExtraction::getDbCovariateData() and having the covariateSettings excludedCovariateConceptIds parameter = c(900000010). The concept is still being included in models within PLP.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with FeatureExtraction::getDbCovariateData() and trace how covariateSettings$excludedCovariateConceptIds is handled for concept 900000010. Reproduce the case in which the Mental Health Substance Abuse Coverage Indicator remains included, then verify that the concept is absent from the generated covariates used by PLP.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100