NFDI4Microbiota / NFDI4Microbiota/MetadataStandards
community wish: metadata suggestions for shotgun sequencing
Nobody has claimed this yet.
- Dominant language
- TeX
- Stars
- 10
- Forks
- 6
- PR merge metrics
- No merged PRs in 30d
Description
Wish from a community member who is doing analysis for others and needs to collect (or run after) their metadata:
Predefined sample collection & metadata fields are needed: Collection for metagenomic sample metadata for different organisms for Shotgun-sequencing and metagenomics
Possible To-Dos:
- check which metadata fields might be applicable for shotgun sequencing in our existing tables (or identify possible standard suggestions from GSC or other consortia)
- check if current metagenome metadata fields for this community member are sufficient enough or need to be extended > https://github.com/NFDI4Microbiota/MetadataStandards/blob/main/Technical/Metagenome_Technical_Metadata.md
Best
Maja
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading Technical/Metagenome_Technical_Metadata.md, then compare its current fields with shotgun-sequencing needs and the relevant standards identified in the issue. Done means documenting whether the existing fields are sufficient and recording any agreed extensions.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- tex
- Domain
- documentation
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 28/100