NEONScience / NEONScience/NEON-geolocation

error running example geoNEON code

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Dominant language
R
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Description

> library(devtools)
> install_github('NEONScience/NEON-geolocation/geoNEON', dependencies=TRUE)
Skipping install of 'geoNEON' from a github remote, the SHA1 (a26a3990) has not changed since last install.
  Use `force = TRUE` to force installation
> library(geoNEON)
> d <- data.frame(namedLocation="GUAN_044.basePlot.ltr", subplotID=23, trapID="GUAN_044_385")
> def.calc.geo.os(d, "ltr_pertrap")

returns -
| | 0%
Error in which(clipCell$clipCellNumber == subplot.loc$cellNum[i] & clipCell$pointID == :
lazy-load database 'C:/Users/kjones/Documents/R/win-library/3.4/geoNEON/R/sysdata.rdb' is corrupt
In addition: Warning messages:
1: In which(clipCell$clipCellNumber == subplot.loc$cellNum[i] & clipCell$pointID == :
restarting interrupted promise evaluation
2: In which(clipCell$clipCellNumber == subplot.loc$cellNum[i] & clipCell$pointID == :
internal error -3 in R_decompress1

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reproducing the reported install and library commands, then run def.calc.geo.os with the supplied data frame. Investigate whether the corrupt geoNEON lazy-load database is caused by the package installation or the local R environment; the issue is done when the example runs successfully or the cause and required fix are documented.

Written by the indexing model from the issue text.

Assessment

Tech stack
r
Domain
data
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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